List of publications


Momir Futo, Luka Opašić, Sara Koska, Nina Čorak, Tin Široki, Vaishnavi Ravikumar, Annika Thorsell, Maša Lenuzzi, Domagoj Kifer, Mirjana Domazet-Lošo, Kristian Vlahoviček, Ivan Mijakovic, Tomislav Domazet-Lošo (2021) Embryo-Like Features in Developing Bacillus subtilis Biofilms. Molecular biology and evolution, 38(1):31-47. [LINK

Lei Shi, Abderahmane Derouiche, Santosh Pandit, Shadi Rahimi, Aida Kalantari, Momir Futo, Vaishnavi Ravikumar, Carsten Jers, Venkata RSS Mokkapati, Kristian Vlahoviček, Ivan Mijakovic (2020) Evolutionary Analysis of the Bacillus subtilis Genome Reveals New Genes Involved in Sporulation. Molecular Biology and Evolution, 37(6):1667–1678. [LINK]


Tin Široki, Sara Koska, Nina Čorak, Momir Futo, Tomislav Domazet-Lošo, Mirjana Domazet-Lošo (2019) Correspondence Analysis Applied to Large Scale Evo-Devo Data. 42nd International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO), 262-265. [LINK]


Ivan Andreas Stancik, Martin Sebastijan Šestak, Boyang Ji, Marina Axelson-Fisk, Damjan Franjevic, Carsten Jers, Tomislav Domazet-Lošo, Ivan Mijakovic (2018) Serine/Threonine protein kinases from bacteria, archaea and eukarya share a common evolutionary origin deeply rooted in the tree of life. Journal of molecular biology, 430(1):27-32. [LINK]


Vaishnavi Ravikumar, Nicolas C Nalpas, Viktoria Anselm, Karsten Krug, Maša Lenuzzi, Martin Sebastijan Šestak, Tomislav Domazet-Lošo, Ivan Mijakovic, Boris Macek (2018) In-depth analysis of Bacillus subtilis proteome identifies new ORFs and traces the evolutionary history of modified proteins. Scientific reports, 8:17246. [LINK]


Thomas CG Bosch, Alexander Klimovich, Tomislav Domazet-Lošo, Stefan Gründer, Thomas W Holstein, Gáspár Jékely, David J Miller, Andrea P Murillo-Rincon, Fabian Rentzsch, Gemma S Richards, Katja Schröder, Ulrich Technau, Rafael Yuste (2017) Back to the basics: cnidarians start to fire. Trends in neurosciences, 40(2):92-105. [LINK]


Alex E Pozhitkov, Rafik Neme, Tomislav Domazet-Lošo, Brian G Leroux, Shivani Soni, Diethard Tautz, Peter A Noble (2017) Tracing the dynamics of gene transcripts after organismal death. Open biology, 7(1):160267. [LINK]


Tomislav Domazet-Lošo, Anne-Ruxandra Carvunis, Mar Albà, Martin Sebastijan Šestak, Robert Bakarić, Rafik Neme, Diethard Tautz (2017) No evidence for phylostratigraphic bias impacting inferences on patterns of gene emergence and evolution. Molecular biology and evolution, 34(4):843-856. [LINK]


Fei Xu, Tomislav Domazet-Lošo, Dingding Fan, Thomas L Dunwell, Li Li, Xiaodong Fang, Guofan Zhang (2016) High expression of new genes in trochophore enlightening the ontogeny and evolution of trochozoans. Scientific reports, 6:34664. [LINK]


Mirjana Domazet-Loso, Tomislav Domazet-Loso (2016) gmos: Rapid Detection of Genome Mosaicism over Short Evolutionary Distances. PLOS One, 11(11): e0166602. [LINK]


Martin Sebastijan Šestak, Tomislav Domazet-Lošo (2015) Phylostratigraphic profiles in zebrafish uncover chordate origins of the vertebrate brain.Molecular biology and evolution, 32(2):299-312. [LINK]


Thomas CG Bosch, Maja Adamska, René Augustin, Tomislav Domazet‐Loso, Sylvain Foret, Sebastian Fraune, Noriko Funayama, Juris Grasis, Mayuko Hamada, Masayuki Hatta, Bert Hobmayer, Kotoe Kawai, Alexander Klimovich, Michael Manuel, Chuya Shinzato, Uli Technau, Seungshic Yum, David J Miller (2014) How do environmental factors influence life cycles and development? An experimental framework for early‐diverging metazoans. Bioessays, 36(12):1185-1194. [LINK]


Tomislav Domazet-Lošo, Alexander Klimovich, Boris Anokhin, Friederike Anton-Erxleben, Mailin J Hamm, Christina Lange, Thomas CG Bosch (2014) Naturally occurring tumours in the basal metazoan Hydra. Nature communications, 5:4222. [LINK]


Björn Fuchs, Wei Wang, Simon Graspeuntner, Yizhu Li, Santiago Insua, Eva-Maria Herbst, Philipp Dirksen, Anna-Marei Böhm, Georg Hemmrich, Felix Sommer, Tomislav Domazet-Lošo, Ulrich C Klostermeier, Friederike Anton-Erxleben, Philip Rosenstiel, Thomas CG Bosch, Konstantin Khalturin (2014) Regulation of polyp-to-jellyfish transition in Aurelia aurita. Current Biology, 24(3):263-273. [LINK]


Alex de Mendoza, Arnau Sebé-Pedrós, Martin Sebastijan Šestak, Marija Matejčić, Guifré Torruella, Tomislav Domazet-Lošo, Iñaki Ruiz-Trillo (2013) Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages. Proceedings of the National Academy of Sciences, 100(50):E4858-E4866. [LINK]


Martin Sebastijan Šestak, Vedran Božičević, Robert Bakarić, Vedran Dunjko, Tomislav Domazet-Lošo (2013) Phylostratigraphic profiles reveal a deep evolutionary history of the vertebrate head sensory systems. Frontiers in zoology, 10:18. [LINK]


Margaret McFall-Ngai, Michael G Hadfield, Thomas CG Bosch, Hannah V Carey, Tomislav Domazet-Lošo, Angela E Douglas, Nicole Dubilier, Gerard Eberl, Tadashi Fukami, Scott F Gilbert, Ute Hentschel, Nicole King, Staffan Kjelleberg, Andrew H Knoll, Natacha Kremer, Sarkis K Mazmanian, Jessica L Metcalf, Kenneth Nealson, Naomi E Pierce, John F Rawls, Ann Reid, Edward G Ruby, Mary Rumpho, Jon G Sanders, Diethard Tautz, Jennifer J Wernegreen (2013) Animals in a bacterial world, a new imperative for the life sciences. Proceedings of the National Academy of Sciences, 110(9):3229-3236. [LINK]


Sören Franzenburg, Sebastian Fraune, Sven Künzel, John F Baines, Tomislav Domazet-Lošo, Thomas CG Bosch (2012) MyD88-deficient Hydra reveal an ancient function of TLR signaling in sensing bacterial colonizers. Proceedings of the National Academy of Sciences, 109(47):19374-19379. [LINK]


Georg Hemmrich, Konstantin Khalturin, Anna-Marei Boehm, Malte Puchert, Friederike Anton-Erxleben, Jörg Wittlieb, Ulrich C Klostermeier, Philip Rosenstiel, Hans-Heinrich Oberg, Tomislav Domazet-Lošo, Toshimi Sugimoto, Hitoshi Niwa, Thomas CG Bosch (2012) Molecular Signatures of the Three Stem Cell Lineages in Hydra and the Emergence of Stem Cell Function at the Base of Multicellularity. Molecular Biology and Evolution, 29(11):3267–3280. [LINK]


Guofan Zhang, Xiaodong Fang, Ximing Guo, LI Li, Ruibang Luo, Fei Xu, Pengcheng Yang, Linlin Zhang, Xiaotong Wang, Haigang Qi, Zhiqiang Xiong, Huayong Que, Yinlong Xie, Peter WH Holland, Jordi Paps, Yabing Zhu, Fucun Wu, Yuanxin Chen, Jiafeng Wang, Chunfang Peng, Jie Meng, Lan Yang, Jun Liu, Bo Wen, Na Zhang, Zhiyong Huang, Qihui Zhu, Yue Feng, Andrew Mount, Dennis Hedgecock, Zhe Xu, Yunjie Liu, Tomislav Domazet-Lošo, Yishuai Du, Xiaoqing Sun, Shoudu Zhang, Binghang Liu, Peizhou Cheng, Xuanting Jiang, Juan Li, Dingding Fan, Wei Wang, Wenjing Fu, Tong Wang, Bo Wang, Jibiao Zhang, Zhiyu Peng, Yingxiang Li, Na Li, Jinpeng Wang, Maoshan Chen, Yan He, Fengji Tan, Xiaorui Song, Qiumei Zheng, Ronglian Huang, Hailong Yang, Xuedi Du, Li Chen, Mei Yang, Patrick M Gaffney, Shan Wang, Longhai Luo, Zhicai She, Yao Ming, Wen Huang, Shu Zhang, Baoyu Huang, Yong Zhang, Tao Qu, Peixiang Ni, Guoying Miao, Junyi Wang, Qiang Wang, Christian EW Steinberg, Haiyan Wang, Ning Li, Lumin Qian, Guojie Zhang, Yingrui Li, Huanming Yang, Xiao Liu, Jian Wang, Ye Yin, Jun Wang (2012) The oyster genome reveals stress adaptation and complexity of shell formation. Nature, 490:49-54. [LINK]


Diethard Tautz, Tomislav Domazet-Lošo (2011) The evolutionary origin of orphan genes. Nature Reviews Genetics, 12(10):692-702. [LINK]


Tomislav Domazet-Lošo, Diethard Tautz (2010) Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa. BMC Biology, 8:66. [LINK]


Tomislav Domazet-Lošo, Diethard Tautz (2010) A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns.Nature 468:815–818. [LINK]


Tomislav Domazet-Lošo, Diethard Tautz (2008) An ancient evolutionary origin of genes associated with human genetic diseases. Molecular biology and evolution, 25(12):2699-2707. [LINK]


Tomislav Domazet-Lošo, Josip Brajković, Diethard Tautz (2007) A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages. Trends in Genetics, 23(11):533-539. [LINK]


Alex Pozhitkov, Peter A Noble, Tomislav Domazet-Lošo, Arne W Nolte, Rainer Sonnenberg, Peer Staehler, Markus Beier, Diethard Tautz (2006) Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted. Nucleic acids research, 34(9): e66. [LINK


Gabriel Marais, Tomislav Domazet-Lošo, Diethard Tautz, Brian Charlesworth (2004) Correlated evolution of synonymous and nonsynonymous sites in Drosophila. Journal of molecular evolution, 59(6):771-779. [LINK]


Tomislav Domazet-Loso, Diethard Tautz (2003) An evolutionary analysis of orphan genes in Drosophila. Genome research, 13(10):2213-2219. [LINK]

Contact

Domazet-Lošo Research Group

Macroevolution Research. Our lab focuses on macro-evolutionary patterns across the tree of life.
Ruđer Bošković Institute

Division of Molecular Biology
Laboratory of Evolutionary Genetics
wing 5 / rooms 109-111

Biljenička cesta 54
HR-10000 Zagreb
Croatia
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